GO statistics

Select details for the GO term subgraph parameters:

Species:

Network type:

CLR threshold:

GO namespace:

Filter options ( 0 = no filter ):

Annotations:

Order:

Size:

Density:

GO id	GO description	1. Annotations	2. Order	3. Size	4. Density	5. Avgnn	6. Avgpl	7. Inngh	8. Outngh	9. Allngh
GO:0009507	chloroplast	3383	768	847	0.00286899717514	196.603484729	1.1008492569	0.0670289855073	0.00555254227859	0.00709025065104
GO:0005730	nucleolus	274	38	33	0.0469416785206	9.36432748538	1.0	2.27631578947	1.90350877193	1.90027700831
GO:0005739	mitochondrion	2434	87	81	0.0216519647153	18.9684210526	1.0	1.92775041051	0.167528735632	0.299511163959
GO:0009570	chloroplast stroma	620	8	7	0.25	6.25	1.0	98.25	4.14285714286	15.65625
GO:0031974	membrane-enclosed lumen	502	80	75	0.0231012658228	9.59339962121	1.18390804598	0.633088235294	0.749621212121	0.7178125
GO:0031975	envelope	848	73	72	0.0266362252664	41.5598825832	1.35	2.59726027397	0.174223422729	0.336648526929
GO:0005654	nucleoplasm	149	13	8	0.0897435897436	1.30769230769	1.0	5.47252747253	24.6923076923	17.3195266272
GO:0031090	organelle membrane	896	21	19	0.0904761904762	12.7142857143	1.0	24.5	1.03258145363	3.21768707483
GO:0043228	non-membrane-bounded organelle	923	149	187	0.0168692182115	16.7391862469	1.16888888889	0.373601789709	0.152798102639	0.173190396829
GO:0031981	nuclear lumen	435	75	69	0.0241441441441	9.76273737374	1.16455696203	0.636078431372	0.865136612021	0.807822222223
GO:0005618	cell wall	568	3	2	0.666666666667	1.66666666667	1.0	294.333333333	7.83333333333	103.111111111
GO:0005829	cytosol	1840	282	304	0.00764745968047	26.4313972564	1.06461538462	0.181012250161	0.0347842564019	0.0445274382578
GO:0009536	plastid	3451	778	857	0.00282875604212	195.599461968	1.10167714885	0.0663909690398	0.00540895712461	0.00691576185725
GO:0012505	endomembrane system	215	7	6	0.285714285714	2.38095238095	1.0	30.0476190476	26.1428571429	27.1428571429
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	75	3	2	0.666666666667	1.66666666667	1.0	121.666666667	55.6666666667	75.4444444443
GO:0005783	endoplasmic reticulum	506	16	14	0.116666666667	4.70892857143	1.0	18.7291666667	2.17307692307	5.1875
GO:0005789	endoplasmic reticulum membrane	73	3	2	0.666666666667	1.66666666667	1.0	119.0	55.6666666667	74.5555555557
GO:0005694	chromosome	169	6	4	0.266666666667	2.0	1.0	43.5833333333	50.5833333333	45.75
GO:0005886	plasma membrane	2898	221	227	0.00933772110243	22.199131282	1.0	0.357164404223	0.0365944734877	0.056530374071
GO:0032991	macromolecular complex	1692	284	324	0.00803762504355	43.7626458689	1.07163323782	0.177336747759	0.0434539052496	0.0518002380479
GO:0009941	chloroplast envelope	537	4	2	0.333333333333	1.0	1.0	100.25	49.875	72.8125
GO:0071944	cell periphery	3356	270	283	0.00779292303456	27.8812950399	1.0	0.27662037037	0.0249635462234	0.0386419753085
GO:0070013	intracellular organelle lumen	496	80	75	0.0231012658228	9.59339962121	1.18390804598	0.633088235294	0.749621212121	0.7178125
GO:0016592	mediator complex	28	2	1	1.0	1.0	1.0	77.5	178.0	125.75
GO:0044432	endoplasmic reticulum part	85	3	2	0.666666666667	1.66666666667	1.0	130.333333333	55.6666666667	78.3333333333
GO:0044437	vacuolar part	450	3	2	0.666666666667	1.66666666667	1.0	288.666666667	13.0	104.666666667
GO:0044435	plastid part	1156	30	32	0.0735632183908	8.86818181818	1.0	7.95833333333	0.923076923077	1.79555555556
GO:0044434	chloroplast part	1128	23	20	0.0790513833992	8.21739130435	1.0	13.768115942	1.36304347826	2.88279773157
GO:0044451	nucleoplasm part	137	13	8	0.0897435897436	1.30769230769	1.0	4.94505494505	24.0673076923	16.6686390532
GO:0031967	organelle envelope	848	73	72	0.0266362252664	41.5598825832	1.35	2.59726027397	0.174223422729	0.336648526929
GO:0031224	intrinsic to membrane	1020	25	23	0.0766666666667	15.16	1.0	20.98	1.09391304348	2.6336
GO:0016021	integral to membrane	789	5	4	0.4	3.4	1.0	201.4	9.0	47.0
GO:0043234	protein complex	1174	180	194	0.0119801365611	30.0387978901	1.08920187793	0.327777777778	0.0911924119239	0.111635802469
GO:0043232	intracellular non-membrane-bounded organelle	923	149	187	0.0168692182115	16.7391862469	1.16888888889	0.373601789709	0.152798102639	0.173190396829
GO:0043233	organelle lumen	496	80	75	0.0231012658228	9.59339962121	1.18390804598	0.633088235294	0.749621212121	0.7178125
GO:0009506	plasmodesma	772	27	23	0.0655270655271	6.33333333333	1.0	9.18518518519	1.59581320451	2.65569272977
GO:0030312	external encapsulating structure	569	3	2	0.666666666667	1.66666666667	1.0	294.333333333	7.83333333333	103.111111111
GO:0030054	cell junction	776	27	23	0.0655270655271	6.33333333333	1.0	9.2037037037	1.59581320451	2.65843621399
GO:0031225	anchored to membrane	218	6	5	0.333333333333	4.33333333333	1.0	106.666666667	14.9666666667	29.6944444445
GO:0009526	plastid envelope	561	4	2	0.333333333333	1.0	1.0	102.125	49.875	73.75
GO:0005911	cell-cell junction	774	27	23	0.0655270655271	6.33333333333	1.0	9.2037037037	1.59581320451	2.65843621399
GO:0005794	Golgi apparatus	978	4	3	0.5	2.5	1.0	259.75	4.66666666667	68.0
GO:0044428	nuclear part	546	95	94	0.0203807390817	11.7090637735	1.36	0.450526315789	0.536975349766	0.516121883657
GO:0044425	membrane part	1470	78	81	0.026973026973	35.9996438746	1.0	4.76495726496	0.146837606837	0.317061143985
GO:0044427	chromosomal part	122	2	1	1.0	1.0	1.0	190.5	313.5	238.5
GO:0044422	organelle part	2806	899	1460	0.00358973469656	151.337534104	1.87725877941	0.0300851074838	0.00661769605758	0.00744369284374
GO:0044446	intracellular organelle part	2798	897	1455	0.00359332696289	151.374486895	1.87829059829	0.0301262606622	0.00664776867207	0.00747568073437
GO:0009532	plastid stroma	642	11	13	0.236363636364	5.65800865801	1.0	36.2727272727	3.31313131313	9.11570247936
GO:0005576	extracellular region	1978	228	246	0.00942885848984	85.9363417884	1.87812041116	1.63450292398	0.0298745767929	0.0497653124039
GO:0055044	symplast	772	27	23	0.0655270655271	6.33333333333	1.0	9.18518518519	1.59581320451	2.65569272977
GO:0005773	vacuole	777	27	23	0.0655270655271	12.5555555556	1.0	9.10185185185	0.935587761674	2.10562414266
GO:0005774	vacuolar membrane	446	3	2	0.666666666667	1.66666666667	1.0	288.333333333	13.0	104.555555556
GO id	GO description	1. Annotations	2. Order	3. Size	4. Density	5. Avgnn	6. Avgpl	7. Inngh	8. Outngh	9. Allngh

Column explanations:

1. Annotations: - the number of GO annotations for the specified term
2. Order: - the order of the GO term subgraph (number of vertices with at least one adjacent edge)
3. Size: - the size of the GO term subgraph (number of edges)
4. Density: - the density of the GO term subgraph (ratio of the number of edges versus the number of possible edges)
5. Avgnn: - average nearest neighbor degree for all the network nodes adjacent to the GO term subgraph (for this measure the graph is considered undirected in the gene regulation network case)
6. Avgpl: - average path length of the GO term subgraph (for this measure in the gene regulation network case the subgraph is directed)
7. Inngh: - in-neighborhood - only for gene regulation networks - average number of regulators from the whole network to the GO term subgraph (gene regulation case - average number of source nodes for the GO subgraph)
8. Outngh: - out-neighborhood - only for gene regulation networks - average number of genes from the whole network regulated from the GO term subgraph (average number of sink nodes for the GO subgraph)